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Species Profile | Genome Assembly |
- Panax ginseng C. A. Meyer
- Panax notoginseng (Burkill) F. H. Chen
- Panax zingiberensis C.Y. Wu&K.M. Feng
- Panax quinquefolius L.
- Panax japonicus C.A.Mey.var.Major
- Panax japonicus C.A.Mey
- Panax stipuleanatus H. T. Tsai&K. M. Feng
- Panax vietnamensis C.Y. Wu&K.M. Feng
- Panax vietnamensis var.langbianensis
- Panax vietnamensis var.fuscidiscus
- Panax bipinnatifidus var.angustifolius (Burkill) J. Wen
- Panax bipinnatifidus Seen
- Panax pseudoginseng Wallich
- Panax trifolius L.
- Panax sokpayensis
- Panax wangianus Sun
Species Profile
| Genus | Panax |
| Species | Panax zingiberensis C.Y. Wu&K.M. Feng |
| Common name | Ginger ginseng |
| Synonyms | |
| Chromosome | 2n=4x=48 |
| Utilization | medicinal |
| Distribution | 1000-1700m a.l.s.;Shading place under evergreen broad-leaved forest.SE Yunnan,China;N Vietnam. |
Herbs, perennial,20-60 cm tall.Rootstock fleshy,horizontal,resembling that of species of Zingiber.Leaves 3-7,verticillate at apex of stem, palmately compound; petiole base without stipule or stipulelike appendages; leaflets 3-5,sessile or subsessile,elliptic to obovate-oblong,6-18 × 3-6 cm,membranous,both surfaces setose on veins,base cuneate,margin serrate or slightly biserrate, setose, apex acuminate to long acuminate.Inflorescence a solitary,terminal umbel; peduncle 24-26 cm,pubescent.Filaments longer than petals.Ovary 2-carpellate; styles 2,united to middle.Fruit red,globose-nephroid; seeds 2,triangular-subglobose.Fl.Jul-Aug,fr.Aug-Oct.
QIN Haining, et al, 2021, China Checklist of Higher Plants, In the Biodiversity Committee of Chinese Academy of Sciences ed., Catalogue of Life China: 2021 Annual Checklist, Beijing, China.Zhou M, Yang G, Sun G, Guo Z, Gong X, Pan Y. Resolving complicated relationships of the Panax bipinnatifidus complex in southwestern China by RAD-seq data[J].Mol Phylogenet Evol.2020,149:106851.
Genome assembly
| Items | 2017a | 2017b | 2020a | 2020b | 2021a | 2017 | 2018 |
|---|---|---|---|---|---|---|---|
| Plant material | Notoginseng | Notoginseng | Notoginseng | Notoginseng | Notoginseng | 4nullyearoldP. ginseng line IR826 | P.Ginsengcultivar “Chunpoong” |
| Size of raw data(Gb) | 385.28 | 1837.6 | 178.19 | 240.22 | 424 | 391.46 | 746 Gb pairednullend and 365 Gb matenullpaired raw data |
| Total length of contigs (Gb) | 1.53 | 1.99 | - | 2.25 | 2.4 | 3.00 | 2.99 |
| Number of contigs | 225513 | 563700 | - | - | 2993 | 39.48kb | - |
| Contig N50 | 13.16 kb | 15.99 kb | 1.12 Mb | 220.89kb | 1.45Mb | 21.98Kb | 13.2 kb |
| Longest contig (bp) | 120.91 kb | 199.81 kb | 13.35 Mb | 7.10Mb | - | 574.18Kb | - |
| Number of scaffolds | 76517 | 122131 | 13292 | 219 | 5218 | 9072 | 9845 |
| Scaffold N50 | 157.81 kb | 96.16 kb | 216.47Mb | 173.39 Mb | 196.33 Mb | 108.71kb | 158 kb |
| Longest scaffold (bp) | 1.19 Mb | 834.33 kb | 295.55 Mb | 219.05Mb | 460.99kb | 1303.41kb | 3.64Mb |
| GC content (%) | 34.85 | 28.65 | 34.45 | 34.02 | 34.43 | 42 | 35 |
| Number of genes | 34369 | 36790 | 37606 | 39452 | 47870 | 42006 | 59352 |
| Average gene length (bp) | 2705 | 3307 | 5060 | 3883 | - | - | - |
| Complete BUSCOs (%)(Genome) | - | 94.5 | 96.6 | 89.3 | 95.4 | - | - |
| BUSCOs (%)(Gene set) | 71.3 | 74.1 | - | 82.5 | 94 | 69.9 | 94.6 |
| Average CDS length (bp) | 957 | 942 | 1203 | 1002 | 1444 | - | 1120 |
| Average exon length (bp) | 251.39 | 211.92 | 231 | 224.65 | 293.09 | - | - |
| Average exon number per gene | 3.8 | 4.45 | 5.21 | 4.5 | 4.9 | - | - |
| Average transcript length (bp) | 2,705 (UTR excluded） | 3307 | 3759 | 5060 | 5183 | - | - |
| Percentage of repeat sequences (%) | 61.31 | 81.26 | 85.85 | 79.07 | 88.2 | 62.17 | - |
| Percentage of LTRnullRTs (%) | 57.41 | 66.72 | 58.88 | - | 81.2 | 83.5 | - |
| Reference | (Zhang et al., 2017) | (Chen et al., 2017) | (Jiang et al.,2020) | (Fan et al.,2020) | (Yang et al.,2021) | (Xu et al.,2017) | (Jayakodi et al.,2017) |