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Species Profile Genome Assembly

Species Profile

Genus Panax
Species Panax wangianus Sun
Common name Emei Renshen
Synonyms Panax pseudoginseng var. wangianus
Chromosome
Utilization medicinal
Distribution Wet forests and bamboo forests of southwestern China, altitude 800-1350 m AMSL;Meghalaya,India
Description

Herbs, perennial;P. wangianus has a whorl of digitately compound leaf at the summit of aerial shoot; the leaf (prong) consists of three to eight palmately compound leaflets with a petiole, of which the terminal 3 to 5 leaflets are larger than the lateral 2 to 3 leaflets. The flowers were arranged in an umbel inflorescence on a long peduncle arising from the centre of the leaf attachment at the top of the aerial stem. The flowers were bisexual and pentamerous with an inferior ovary. The fruits were berry. The height of aerial shoot ranges from 30 cm to 112 cm depending upon the age of the plant. Similarly the aerial shoot diameter as well as rhizome diameter also varies from 0.3 cm to 1.5 cm and 0.5 cm to 3.5 cm respectively in different age classes. Each ovary consists of 3 carpels. In the age class of 35–50 years and above 50 years, the number of carpels varied from 3 to 5. Flowers with penta and tetra stigmatic condition have 5 and 4 carpels respectively. The terminal inflorescence matured first followed by axillary inflorescence. Young fruits were green in color which appeared in July and matured during October. As fruits mature, it became bright red on the bottom and black on the top. The color of pedicel also changed from green to crimson red. Fruits contained 1 to 5 seeds.

References

Frodin, D.G. & Govaerts, R. (2003 publ. 2004). World Checklist and Bibliography of Araliaceae: 1-444. The Board of Trustees of the Royal Botanic Gardens, Kew. N. Venugopal • Preeti Ahuja.Relationship between age, size, fecundity and climatic factors in Panax wangianus an endangered medicinal plant in the sacred grove forest of North-East India[J].Journal of Forestry Research.2011,22(3): 427−435.

Genome assembly

Items 2017a 2017b 2020a 2020b 2021a 2017 2018
Plant material Notoginseng Notoginseng Notoginseng Notoginseng Notoginseng 4nullyearoldP. ginseng line IR826 P.Ginsengcultivar “Chunpoong”
Size of raw data(Gb) 385.28 1837.6 178.19 240.22 424 391.46 746 Gb pairednullend and 365 Gb matenullpaired raw data
Total length of contigs (Gb) 1.53 1.99 - 2.25 2.4 3.00 2.99
Number of contigs 225513 563700 - - 2993 39.48kb -
Contig N50 13.16 kb 15.99 kb 1.12 Mb 220.89kb 1.45Mb 21.98Kb 13.2 kb
Longest contig (bp) 120.91 kb 199.81 kb 13.35 Mb 7.10Mb - 574.18Kb -
Number of scaffolds 76517 122131 13292 219 5218 9072 9845
Scaffold N50 157.81 kb 96.16 kb 216.47Mb 173.39 Mb 196.33 Mb 108.71kb 158 kb
Longest scaffold (bp) 1.19 Mb 834.33 kb 295.55 Mb 219.05Mb 460.99kb 1303.41kb 3.64Mb
GC content (%) 34.85 28.65 34.45 34.02 34.43 42 35
Number of genes 34369 36790 37606 39452 47870 42006 59352
Average gene length (bp) 2705 3307 5060 3883 - - -
Complete BUSCOs (%)(Genome) - 94.5 96.6 89.3 95.4 - -
BUSCOs (%)(Gene set) 71.3 74.1 - 82.5 94 69.9 94.6
Average CDS length (bp) 957 942 1203 1002 1444 - 1120
Average exon length (bp) 251.39 211.92 231 224.65 293.09 - -
Average exon number per gene 3.8 4.45 5.21 4.5 4.9 - -
Average transcript length (bp) 2,705 (UTR excluded) 3307 3759 5060 5183 - -
Percentage of repeat sequences (%) 61.31 81.26 85.85 79.07 88.2 62.17 -
Percentage of LTRnullRTs (%) 57.41 66.72 58.88 - 81.2 83.5 -
Reference (Zhang et al., 2017) (Chen et al., 2017) (Jiang et al.,2020) (Fan et al.,2020) (Yang et al.,2021) (Xu et al.,2017) (Jayakodi et al.,2017)