Jump to
section
Species Profile Genome Assembly

Species Profile

Genus Panax
Species Panax vietnamensis C.Y. Wu&K.M. Feng
Common name Vietnamese ginseng
Synonyms
Chromosome 2n=2x=24
Utilization medicinal
Distribution Broad-leaved evergreen forests.SE Yunnan,China;N Vietnam.
Description

Herbs, perennial,45-55m tall.Rhizome prostrate,nodular,and with indented stem marks; Root mass fusiform.Stem base scales persistent,alternate leaves,palmately compound leaves,3 round stem apical; Petiole 4-7cm long,glabrous; Stipules ovate,ca.2mm long;Leaflets 5(or rarely 7),pinnately divided,lobes unequal,larger in the middle,smaller at both ends,6-12 x 2.5-6cm,apex caudate acuminate,base broadly cuneate to suborbicular,oblique,margin serrate and bristly,upper veins sparsely bristly.Inflorescences umbels solitary at stem apex with 50-80 flowers,pedicels 8-10cm long,glabrous,calyx 5-toothed,glabrous; Flowers pale green,petals 5,long ovate to long elliptic; Stamens 5,filaments equal to or slightly longer than petals; Ovary inferior,2-loculed,style 2,united into 1,stigma slightly enlarged and slightly curved.Drupe- shaped berry,globular reniform,ca.8mm in diameter,red when ripe.Seeds 2,subglobose,white,2 -- 3mm in diameter.Flowering from May to June,fruiting from July to August.

References

Frodin, D.G. & Govaerts, R. (2003 publ. 2004). World Checklist and Bibliography of Araliaceae: 1-444. The Board of Trustees of the Royal Botanic Gardens, Kew. Nong VD,Le NT,Nguyen DC,et al.A new variety of Panax (Araliaceae) from Lam Vien Plateau,Vietnam and its molecular evidence.Phytotaxa.2016(9),277 (1): 047–058.

Genome assembly

Items 2017a 2017b 2020a 2020b 2021a 2017 2018
Plant material Notoginseng Notoginseng Notoginseng Notoginseng Notoginseng 4nullyearoldP. ginseng line IR826 P.Ginsengcultivar “Chunpoong”
Size of raw data(Gb) 385.28 1837.6 178.19 240.22 424 391.46 746 Gb pairednullend and 365 Gb matenullpaired raw data
Total length of contigs (Gb) 1.53 1.99 - 2.25 2.4 3.00 2.99
Number of contigs 225513 563700 - - 2993 39.48kb -
Contig N50 13.16 kb 15.99 kb 1.12 Mb 220.89kb 1.45Mb 21.98Kb 13.2 kb
Longest contig (bp) 120.91 kb 199.81 kb 13.35 Mb 7.10Mb - 574.18Kb -
Number of scaffolds 76517 122131 13292 219 5218 9072 9845
Scaffold N50 157.81 kb 96.16 kb 216.47Mb 173.39 Mb 196.33 Mb 108.71kb 158 kb
Longest scaffold (bp) 1.19 Mb 834.33 kb 295.55 Mb 219.05Mb 460.99kb 1303.41kb 3.64Mb
GC content (%) 34.85 28.65 34.45 34.02 34.43 42 35
Number of genes 34369 36790 37606 39452 47870 42006 59352
Average gene length (bp) 2705 3307 5060 3883 - - -
Complete BUSCOs (%)(Genome) - 94.5 96.6 89.3 95.4 - -
BUSCOs (%)(Gene set) 71.3 74.1 - 82.5 94 69.9 94.6
Average CDS length (bp) 957 942 1203 1002 1444 - 1120
Average exon length (bp) 251.39 211.92 231 224.65 293.09 - -
Average exon number per gene 3.8 4.45 5.21 4.5 4.9 - -
Average transcript length (bp) 2,705 (UTR excluded) 3307 3759 5060 5183 - -
Percentage of repeat sequences (%) 61.31 81.26 85.85 79.07 88.2 62.17 -
Percentage of LTRnullRTs (%) 57.41 66.72 58.88 - 81.2 83.5 -
Reference (Zhang et al., 2017) (Chen et al., 2017) (Jiang et al.,2020) (Fan et al.,2020) (Yang et al.,2021) (Xu et al.,2017) (Jayakodi et al.,2017)