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Species Profile | Genome Assembly |
- Panax ginseng C. A. Meyer
- Panax notoginseng (Burkill) F. H. Chen
- Panax zingiberensis C.Y. Wu&K.M. Feng
- Panax quinquefolius L.
- Panax japonicus C.A.Mey.var.Major
- Panax japonicus C.A.Mey
- Panax stipuleanatus H. T. Tsai&K. M. Feng
- Panax vietnamensis C.Y. Wu&K.M. Feng
- Panax vietnamensis var.langbianensis
- Panax vietnamensis var.fuscidiscus
- Panax bipinnatifidus var.angustifolius (Burkill) J. Wen
- Panax bipinnatifidus Seen
- Panax pseudoginseng Wallich
- Panax trifolius L.
- Panax sokpayensis
- Panax wangianus Sun
Species Profile
| Genus | Panax |
| Species | Panax pseudoginseng Wallich |
| Common name | Himalayan ginseng |
| Synonyms | Aralia quinquefolia var. pseudoginseng; Aralia pseudoginseng |
| Chromosome | 2n=2x=24 |
| Utilization | medicinal |
| Distribution | India,Nepal,Bhutan,Yunnan XiZang in China |
Herbs, perennial; Short rhizome,whip shaped,transverse,with 2 to a few fleshy roots; Succulent roots cylindrical,ca.2-4 cm long,ca.1 cm in diameter,longitudinally wrinkled when dry. Stems solitary on the ground,about 40 cm tall, longitudinal, glabrous,base with persistent scales. The leaves are palmately compound,4 of which are rotated at the apex of the stem. Petiole 4-5 cm long, longitudinally striated,glabrous; Stipules small,lanceolate,5-6 mm long; Small leaf blade 3-4,the film quality, transparent, elliptic to oval, the center one is the 9-10 cm long,3.5-4 cm wide, lateral small,apex long acuminate, base gradually narrow, decurrent, margin with biserrate, 1.5-2 mm long, glabrous below blade surface, lateral veins 8-10 on surface, two sides clearly, Reticulate veins obvious; Petiole 2-10 mm long,tuft bristle at junction with apex of petiole. Umbel single terminal,ca.3.5 cm in diameter, with 20-50 flowers; Pedicels ca.12 cm long,longitudinally striated, glabrous; Pedicels slender,glabrous,ca. 1 cm long; Bracts inconspicuous; Yellow-green; Calyx cup-shaped (calyx of male flowers gyroscopic), margin with 5 triangular teeth;Petals 5, Stamens 5; Ovary 2-loculed; Styles 2 (1 on pistil in male flowers), free, controse.
Frodin, D.G. & Govaerts, R. (2003 publ. 2004). World Checklist and Bibliography of Araliaceae: 1-444. The Board of Trustees of the Royal Botanic Gardens, Kew.Pandey, A.K., Ajmal Ali, M. & Mao, A.A. (2007). Genus Panax L. (Araliaceae) in India Pleione 1(2): 46-54.Wu, Z., Raven, P.H. & Hong, D. (eds.) (2007). Flora of China 13: 1-548. Missouri Botanical Garden Press, St. Louis.
Genome assembly
| Items | 2017a | 2017b | 2020a | 2020b | 2021a | 2017 | 2018 |
|---|---|---|---|---|---|---|---|
| Plant material | Notoginseng | Notoginseng | Notoginseng | Notoginseng | Notoginseng | 4nullyearoldP. ginseng line IR826 | P.Ginsengcultivar “Chunpoong” |
| Size of raw data(Gb) | 385.28 | 1837.6 | 178.19 | 240.22 | 424 | 391.46 | 746 Gb pairednullend and 365 Gb matenullpaired raw data |
| Total length of contigs (Gb) | 1.53 | 1.99 | - | 2.25 | 2.4 | 3.00 | 2.99 |
| Number of contigs | 225513 | 563700 | - | - | 2993 | 39.48kb | - |
| Contig N50 | 13.16 kb | 15.99 kb | 1.12 Mb | 220.89kb | 1.45Mb | 21.98Kb | 13.2 kb |
| Longest contig (bp) | 120.91 kb | 199.81 kb | 13.35 Mb | 7.10Mb | - | 574.18Kb | - |
| Number of scaffolds | 76517 | 122131 | 13292 | 219 | 5218 | 9072 | 9845 |
| Scaffold N50 | 157.81 kb | 96.16 kb | 216.47Mb | 173.39 Mb | 196.33 Mb | 108.71kb | 158 kb |
| Longest scaffold (bp) | 1.19 Mb | 834.33 kb | 295.55 Mb | 219.05Mb | 460.99kb | 1303.41kb | 3.64Mb |
| GC content (%) | 34.85 | 28.65 | 34.45 | 34.02 | 34.43 | 42 | 35 |
| Number of genes | 34369 | 36790 | 37606 | 39452 | 47870 | 42006 | 59352 |
| Average gene length (bp) | 2705 | 3307 | 5060 | 3883 | - | - | - |
| Complete BUSCOs (%)(Genome) | - | 94.5 | 96.6 | 89.3 | 95.4 | - | - |
| BUSCOs (%)(Gene set) | 71.3 | 74.1 | - | 82.5 | 94 | 69.9 | 94.6 |
| Average CDS length (bp) | 957 | 942 | 1203 | 1002 | 1444 | - | 1120 |
| Average exon length (bp) | 251.39 | 211.92 | 231 | 224.65 | 293.09 | - | - |
| Average exon number per gene | 3.8 | 4.45 | 5.21 | 4.5 | 4.9 | - | - |
| Average transcript length (bp) | 2,705 (UTR excluded) | 3307 | 3759 | 5060 | 5183 | - | - |
| Percentage of repeat sequences (%) | 61.31 | 81.26 | 85.85 | 79.07 | 88.2 | 62.17 | - |
| Percentage of LTRnullRTs (%) | 57.41 | 66.72 | 58.88 | - | 81.2 | 83.5 | - |
| Reference | (Zhang et al., 2017) | (Chen et al., 2017) | (Jiang et al.,2020) | (Fan et al.,2020) | (Yang et al.,2021) | (Xu et al.,2017) | (Jayakodi et al.,2017) |