| Jump to section |
Species Profile | Genome Assembly |
- Panax ginseng C. A. Meyer
- Panax notoginseng (Burkill) F. H. Chen
- Panax zingiberensis C.Y. Wu&K.M. Feng
- Panax quinquefolius L.
- Panax japonicus C.A.Mey.var.Major
- Panax japonicus C.A.Mey
- Panax stipuleanatus H. T. Tsai&K. M. Feng
- Panax vietnamensis C.Y. Wu&K.M. Feng
- Panax vietnamensis var.langbianensis
- Panax vietnamensis var.fuscidiscus
- Panax bipinnatifidus var.angustifolius (Burkill) J. Wen
- Panax bipinnatifidus Seen
- Panax pseudoginseng Wallich
- Panax trifolius L.
- Panax sokpayensis
- Panax wangianus Sun
Species Profile
| Genus | Panax |
| Species | Panax bipinnatifidus var.angustifolius (Burkill) J. Wen |
| Common name | Narrow-leaved Japanese ginseng |
| Synonyms | Panax angustifolius; Panax assamicus; Panax japonicus var. angustifolius; Panax pseudoginseng var. angustifolius ; Panax sikkimensis |
| Chromosome | |
| Utilization | medicinal |
| Distribution | Forests,forests in valleys; 1200-3600 m.S Anhui,N Fujian,Gansu,Guangxi,Guizhou,Henan,Hubei,Hunan,Jiangxi,Shaanxi,Shanxi,Sichuan,Xizang,Yunnan,Zhejiang(China); Meghalaya,Bhutan,N India; Japan; Korea; Myanmar; Nepal;NE Thailand;Vietnam,Sikkim. |
Perennial Herbs; Short rhizomes are whip shaped,with 2 or more fleshy roots; Succulent roots are cylindrical,2 -- 4cm long,1cm in diameter,longitudinally wrinkled when dry.Solitary Stems are about 40cm tall,longitudinal,glabrous,with persistent scales at base.The leaves are palmately compound,4 of which are rotated at the apex of the stem.Petioles are 4 -- 5cm long,longitudinally striated,glabrous; Stipules are small,lanceolate,5-6mm long; 3-4 small leaf blade are transparent,elliptic,oval or oblong,the oval in the center of 9-10 cm long,3.5-4 cm are lateral small,the apex is long acuminate,the base is gradually narrow,decurrent,margin with heavy serrate with thorns,densely thorns above the pulse of leaf blade,thorns are 1.5-2 mm long,glabrous below,8-10 couple lateral veins clearly and net veins obviously; Petioles are 2-10mm long,tuft thorns at junction with tip of petiole.single umbels at Stem top,3.5cm in diameter,with 20-50 flowers; Pedicels are 12cm long,longitudinally striated,glabrous; Slenderb pedicels are glabrous,1cm long; Bracts are inconspicuous; Flowers are Yellow-green;Cup-shaped Calyx (calyx of male flower is gyroscopic),margin with 5 triangular teeth; Petals 5,Stamens 5; 2-loculed ovary; Style 2 or 1.
QIN Haining, et al, 2021, China Checklist of Higher Plants, In the Biodiversity Committee of Chinese Academy of Sciences ed., Catalogue of Life China: 2021 Annual Checklist, Beijing, China
Genome assembly
| Items | 2017a | 2017b | 2020a | 2020b | 2021a | 2017 | 2018 |
|---|---|---|---|---|---|---|---|
| Plant material | Notoginseng | Notoginseng | Notoginseng | Notoginseng | Notoginseng | 4nullyearoldP. ginseng line IR826 | P.Ginsengcultivar “Chunpoong” |
| Size of raw data(Gb) | 385.28 | 1837.6 | 178.19 | 240.22 | 424 | 391.46 | 746 Gb pairednullend and 365 Gb matenullpaired raw data |
| Total length of contigs (Gb) | 1.53 | 1.99 | - | 2.25 | 2.4 | 3.00 | 2.99 |
| Number of contigs | 225513 | 563700 | - | - | 2993 | 39.48kb | - |
| Contig N50 | 13.16 kb | 15.99 kb | 1.12 Mb | 220.89kb | 1.45Mb | 21.98Kb | 13.2 kb |
| Longest contig (bp) | 120.91 kb | 199.81 kb | 13.35 Mb | 7.10Mb | - | 574.18Kb | - |
| Number of scaffolds | 76517 | 122131 | 13292 | 219 | 5218 | 9072 | 9845 |
| Scaffold N50 | 157.81 kb | 96.16 kb | 216.47Mb | 173.39 Mb | 196.33 Mb | 108.71kb | 158 kb |
| Longest scaffold (bp) | 1.19 Mb | 834.33 kb | 295.55 Mb | 219.05Mb | 460.99kb | 1303.41kb | 3.64Mb |
| GC content (%) | 34.85 | 28.65 | 34.45 | 34.02 | 34.43 | 42 | 35 |
| Number of genes | 34369 | 36790 | 37606 | 39452 | 47870 | 42006 | 59352 |
| Average gene length (bp) | 2705 | 3307 | 5060 | 3883 | - | - | - |
| Complete BUSCOs (%)(Genome) | - | 94.5 | 96.6 | 89.3 | 95.4 | - | - |
| BUSCOs (%)(Gene set) | 71.3 | 74.1 | - | 82.5 | 94 | 69.9 | 94.6 |
| Average CDS length (bp) | 957 | 942 | 1203 | 1002 | 1444 | - | 1120 |
| Average exon length (bp) | 251.39 | 211.92 | 231 | 224.65 | 293.09 | - | - |
| Average exon number per gene | 3.8 | 4.45 | 5.21 | 4.5 | 4.9 | - | - |
| Average transcript length (bp) | 2,705 (UTR excluded) | 3307 | 3759 | 5060 | 5183 | - | - |
| Percentage of repeat sequences (%) | 61.31 | 81.26 | 85.85 | 79.07 | 88.2 | 62.17 | - |
| Percentage of LTRnullRTs (%) | 57.41 | 66.72 | 58.88 | - | 81.2 | 83.5 | - |
| Reference | (Zhang et al., 2017) | (Chen et al., 2017) | (Jiang et al.,2020) | (Fan et al.,2020) | (Yang et al.,2021) | (Xu et al.,2017) | (Jayakodi et al.,2017) |